Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8540461_8540854_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8540461 - 8540854

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGAAC

5'SS Class:

major

3'SS Sequence:

ACCTTCTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

ACCTATTCAACC

Flanking Amino Acid:

ELVAEVEKRNRLKLLLPWLE

Intron Amino Acid Position:

848

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

66.1

39.5

Major BPS

0.82

0.8

83.9

25.3

Major PPT

79.1

0.65

0.8

77.2

30.8

Minor 5ss

31.6

-2.1

3.3

42.7

44.4

Minor BPS

49.4

-0

1.7

57.61

41.3

Associated Gene:

Gene:

CLTC

Ensembl Gene ID:

ENSAPLG00000012095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022160

8529318 - 8551874

22557

ENSAPLT00000012724

8529318 - 8551874

22557