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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8541802_8541968_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8541802 - 8541968
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
VLDNSVFSEHRNLQNLLILT
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
85.6
27.9
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
CLTC
Ensembl Gene ID:
ENSAPLG00000012095
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022160
8529318 - 8551874
22557
ENSAPLT00000012724
8529318 - 8551874
22557