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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8546431_8550527_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8546431 - 8550527
Intron Length:
4097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTGTTCTAACT
Flanking Amino Acid:
IQVMKEYLTKVDKLDASESL
Intron Amino Acid Position:
1604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77.2
0.61
0.9
67.4
42.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
56.8
0.29
1.8
76.65
40.1

Associated Gene:

Gene:
CLTC
Ensembl Gene ID:
ENSAPLG00000012095
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012724
8529318 - 8551874
22557