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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8560927_8563115_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8560927 - 8563115
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GGTTTTATATTT
Flanking Amino Acid:
IKEQHNGNFADSSLLGERKR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
47.5
-0.1
1.8
65.7
39.3

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419