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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8563252_8565669_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8563252 - 8565669
Intron Length:
2418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAGATA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTGTCTTTTAAG
Flanking Amino Acid:
TLINLKEWTIKLWHRRSILV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
74.8
34.9
Major BPS
75.5
0.63
1
66
40.9
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
36.9
-1.5
3.4
48.2
42.2
Minor BPS
55.8
0.04
1.9
64.21
43.7

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419