About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8565761_8567797_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8565761 - 8567797
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGTTTTGTGACT
Flanking Amino Acid:
TYYVEGRHQQYVRYMEKKFF
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
66
38.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
55.9
0.27
2
78.8
37.8

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419