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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8567909_8580266_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8567909 - 8580266
Intron Length:
12358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGAAATTACCT
Flanking Amino Acid:
TGLHTFLLYLGPHIASVTLA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.5
0.82
0.8
84.6
36
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
47.7
-0
2.1
71.09
45.1

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419