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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8580435_8585173_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8580435 - 8585173
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAAAAAATAAAT
Flanking Amino Acid:
SKVRLEACMWGAGTAIGELP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.1
0.77
0.8
76.9
36.6
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
40.3
-0.6
1.9
55.02
38.8

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419