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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8585306_8599179_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8585306 - 8599179
Intron Length:
13874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTGCCTCATTA
Flanking Amino Acid:
EMLEHAETAQDFASRAKLAV
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
78.7
0.65
1
76.2
37.8
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
54.9
0.15
1.9
71.35
41.4

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419