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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8603046_8605510_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8603046 - 8605510
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTCTAACT
Flanking Amino Acid:
GKAVIKMHIQKLFVIITFSK
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
85.5
0.8
0.7
80.2
25.4
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
74.6
0.85
1.6
91.26
31.4

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419