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Intron Name: Anas_platyrhynchos_platyrhynchos_20_8605573_8616679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8605573 - 8616679

Intron Length:

11107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

AACTTTGCATCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGATGAA

U12 Branch Point Sequence:

CTGGGATGAACT

Flanking Amino Acid:

HIVEQMVSLIGAIPSIGPSL

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

83.1

30.9

Major BPS

-0.1

1.3

37.5

42.1

Major PPT

65.5

0.35

63.4

Minor 5ss

31.5

-2.1

2.7

41.5

Minor BPS

43.7

-0.4

2.2

61.52

47.9

Associated Gene:

Gene:

VMP1

Ensembl Gene ID:

ENSAPLG00000011498

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011998

8560824 - 8619242

58419