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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8616783_8618098_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8616783 - 8618098
Intron Length:
1316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTCTTTGTCT
Flanking Amino Acid:
HHKSDSGVPQGENWLSWMFE
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.2
0.75
0.8
81.4
30.6
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.5
-0
3.5
82.48
39.6

Associated Gene:

Gene:
VMP1
Ensembl Gene ID:
ENSAPLG00000011498
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011998
8560824 - 8619242
58419