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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8635876_8636342_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8635876 - 8636342
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTCCAACA
Flanking Amino Acid:
KQGSGNNWANGYTVHGPRHK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
70.8
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
82.1
28.4
Minor 5ss
41.8
-0.9
2.8
50.9
45.2
Minor BPS
57.2
0.22
1.8
75.85
35.3

Associated Gene:

Gene:
TUBD1
Ensembl Gene ID:
ENSAPLG00000011163
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011634
8631119 - 8637943
6825