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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8643350_8645692_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8643350 - 8645692
Intron Length:
2343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
CTCCCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
69.7
43.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.8
0.45
0.8
60.6
35.2
Minor 5ss
47
-0.3
2.9
63.8
41.3
Minor BPS
60.8
0.32
1.8
72.64
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372