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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8645743_8646751_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8645743 - 8646751
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CGGTTTTATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAGTCTTATATT
Flanking Amino Acid:
MDHGGVGQYDLGMEHCEKFE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
73.7
0.53
1
65.7
44.6
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
49
-0
1.9
68.12
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372