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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8648207_8649142_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8648207 - 8649142
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATGTATCTAATT
Flanking Amino Acid:
REGIFMEDTACFYLAEISMA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.7
0.8
0.8
77.4
36.9
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
51.9
0.14
1.8
71.88
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372