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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8650057_8650236_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8650057 - 8650236
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCTTATTA
Flanking Amino Acid:
THTFCGTIEYMAPEILMRSG
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.2
39.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.4
0.8
0.7
81.3
29.2
Minor 5ss
41.2
-1
3
54.4
43.4
Minor BPS
73.2
0.72
1.5
82.59
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372