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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8650328_8650626_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8650328 - 8650626
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
TGGTGCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
ALMYDMLTGAPPFTGENRKK
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
60
39.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
71.3
0.48
1
62.3
44.3
Minor 5ss
33.8
-1.8
3.4
46.1
43.3
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372