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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8651078_8652007_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8651078 - 8652007
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTAACTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CTATTGCTAACT
Flanking Amino Acid:
AGPGDAGEVQAHPFFRHINW
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
73.8
0.54
0.9
65.7
40.6
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
48.6
-0
2.3
72.85
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372