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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8653763_8654357_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8653763 - 8654357
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTTACAGAGCA
Flanking Amino Acid:
LSESANQVFLGFTYVAPSVL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
84.8
0.78
0.8
79.6
32.4
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
45.5
-0.3
2.1
63.88
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010736
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011252
8642942 - 8656313
13372