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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8662153_8662915_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8662153 - 8662915
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TCTTGTTTTACA
Flanking Amino Acid:
QVLRIFCTRPHYGVMASKRQ
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
88.7
0.87
0.7
83.2
31.9
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
55
0.15
2.1
70.62
41.9

Associated Gene:

Gene:
RNFT1
Ensembl Gene ID:
ENSAPLG00000010687
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011142
8547868 - 8667868
120001