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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8662982_8663832_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8662982 - 8663832
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTCAACATAACT
Flanking Amino Acid:
LLGLVYLILKLLSFFGQLRN
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.6
32.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
78.1
0.63
0.9
68.8
37.1
Minor 5ss
35
-1.7
2.9
44.9
43.1
Minor BPS
57.7
0.32
1.9
79.09
42.3

Associated Gene:

Gene:
RNFT1
Ensembl Gene ID:
ENSAPLG00000010687
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011142
8547868 - 8667868
120001