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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8663992_8665567_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8663992 - 8665567
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTCTTTTACA
Flanking Amino Acid:
PSFMMSFKSKGYWYMLLEEL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67
0.38
1
66.1
40.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66.5
0.51
1.6
73.2
38.6

Associated Gene:

Gene:
RNFT1
Ensembl Gene ID:
ENSAPLG00000010687
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011142
8547868 - 8667868
120001