Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8730708_8731157_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8730708 - 8731157

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGGTTCCACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTAAAT

U12 Branch Point Sequence:

TTGCCTGTAAAT

Flanking Amino Acid:

LAQQSNSPFQADAGYALEDK

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.9

29.3

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

70.8

0.47

63.7

42.8

Minor 5ss

44.7

-0.6

3.2

66.4

45.1

Minor BPS

51.1

0.11

2.1

74.41

42.4

Associated Gene:

Gene:

MED13

Ensembl Gene ID:

ENSAPLG00000010093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010569

8705131 - 8757300

52170