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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8741160_8742126_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8741160 - 8742126
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
IEREAGKKHKAEDGASSVTV
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
80.2
0.68
0.9
77.6
35.5
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
MED13
Ensembl Gene ID:
ENSAPLG00000010093
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033151
8705131 - 8758192
53062
ENSAPLT00000010569
8705131 - 8757300
52170