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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8762229_8762921_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8762229 - 8762921
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TAATGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGATGATGAATA
Flanking Amino Acid:
LSELLAIMNKVSESNGEFFL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
76.7
0.6
1
69.8
40.9
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
46.1
-0.2
2.1
59.43
40

Associated Gene:

Gene:
INTS2
Ensembl Gene ID:
ENSAPLG00000009449
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009987
8761468 - 8776549
15082