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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8764912_8765424_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8764912 - 8765424
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATGAAT
5'SS Class:
major
3'SS Sequence:
CCTCCCCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TCCCTGTTAAAT
Flanking Amino Acid:
YCALMGIAGLKPTDEEAEQL
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
74.3
35.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
77.3
0.61
0.7
73.3
25
Minor 5ss
35.7
-1.6
3.3
48.9
41.4
Minor BPS
47.9
-0
2.1
65.72
44.9

Associated Gene:

Gene:
INTS2
Ensembl Gene ID:
ENSAPLG00000009449
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009987
8761468 - 8776549
15082