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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8767664_8768201_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8767664 - 8768201
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGAAACTAAATA
Flanking Amino Acid:
SFTKHKVSIKDWIYRQLCET
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.4
29.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
87.4
0.84
0.7
81.2
36.5
Minor 5ss
45.7
-0.5
2.9
64.3
47.2
Minor BPS
48.2
-0.1
1.8
59.01
40.4

Associated Gene:

Gene:
INTS2
Ensembl Gene ID:
ENSAPLG00000009449
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009987
8761468 - 8776549
15082