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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8770736_8770863_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8770736 - 8770863
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
AATCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CAACTTTGAAAC
Flanking Amino Acid:
WMVLNTVMPRRLWVMTVNAL
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.4
0.48
0.9
67.8
37.8
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
45.5
-0.3
1.4
47.77
34.7

Associated Gene:

Gene:
INTS2
Ensembl Gene ID:
ENSAPLG00000009449
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009987
8761468 - 8776549
15082