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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8775391_8775566_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8775391 - 8775566
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
AINVMGTLLTVLTQSKRYTF
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
88.7
0.87
0.6
84.5
23.4
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
INTS2
Ensembl Gene ID:
ENSAPLG00000009449
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009987
8761468 - 8776549
15082