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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8779599_8780348_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8779599 - 8780348
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATTCTCTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTCTTTAAAG
Flanking Amino Acid:
YPSQLAMMNAIVKGLNSRQH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.9
0.56
1
75.1
33
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
71.5
0.54
1.4
72.3
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030301
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034609
8779506 - 8780474
969