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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8836143_8838156_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8836143 - 8838156
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GGATTTATTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATGAAAT
Flanking Amino Acid:
KISLSRSRNKGLKVRRQCRR
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
75.7
35.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
61.7
0.26
1.2
60.5
43.8
Minor 5ss
36.5
-1.5
2.9
49
47.2
Minor BPS
54.6
0.22
1.8
74.51
40.9

Associated Gene:

Gene:
BRIP1
Ensembl Gene ID:
ENSAPLG00000009095
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009509
8780652 - 8838844
58193