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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8882147_8887119_F

Intron Information:

Intron Rank:
127805
Intron Class:
major
Intron Phase:
Intron Coordinates:
8882147 - 8887119
Intron Length:
4973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTACTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.6
0.8
0.7
81.6
29.6
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
57.7
0.24
1.4
63.56
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018892
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028600
8881958 - 8887191
5234