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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8903570_8904072_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8903570 - 8904072
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTGG
5'SS Class:
major
3'SS Sequence:
TCACCTCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
DSDLRVARLQSKEYPVISKS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
52.4
46.9
Major BPS
80
0.75
1
78.6
31
Major PPT
72.7
0.51
0.8
70.2
30.5
Minor 5ss
40.6
-1
3.4
56
48.2
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
TBX4
Ensembl Gene ID:
ENSAPLG00000008848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009228
8901326 - 8926036
24711