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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8922813_8925884_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8922813 - 8925884
Intron Length:
3072

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGAGCAG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AATGTGTTAACC
Flanking Amino Acid:
AFTSGQMCRVRRMFPSYKVK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
53.8
43.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
68.5
0.42
1
67.5
38.2
Minor 5ss
17.7
-3.7
4
28.1
44.1
Minor BPS
51.8
0.03
2.1
65.22
40.5

Associated Gene:

Gene:
TBX4
Ensembl Gene ID:
ENSAPLG00000008848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009228
8901326 - 8926036
24711