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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8925924_8925962_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8925924 - 8925962
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCACTAGCC
5'SS Class:
major
3'SS Sequence:
CCACTGGGGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGGCAC
U12 Branch Point Sequence:
CCTGCCCCAGCC
Flanking Amino Acid:
RPRSSPLLFPSLAAFTSGQM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
67.7
38.7
Major BPS
43.4
-0.4
1.3
46.8
37.9
Major PPT
49.6
-0
1.1
41.3
42.8
Minor 5ss
20.4
-3.4
4
34
41.5
Minor BPS
41.7
-0.6
2.1
50.97
45.8

Associated Gene:

Gene:
TBX4
Ensembl Gene ID:
ENSAPLG00000008848
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009228
8901326 - 8926036
24711