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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_8990031_9003784_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8990031 - 9003784
Intron Length:
13754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GAAACACTAACC
Flanking Amino Acid:
DFNRNKRKATSFSEREA*
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.1
37.7
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
84.7
0.78
0.7
82
28.2
Minor 5ss
40.8
-1
3.2
60.3
44.3
Minor BPS
46.8
-0.2
1.9
57.04
40

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043518
8990007 - 9338279
348273