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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_899742_900564_R

Intron Information:

Intron Rank:
132171
Intron Class:
major
Intron Phase:
Intron Coordinates:
899742 - 900564
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CATCTGGGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
TGCCCCCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.4
40.3
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
64
0.32
1.1
57.1
43
Minor 5ss
36.1
-1.6
2.9
41.9
44.5
Minor BPS
43
-0.5
2
54.02
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018370
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040464
899000 - 900718
1719