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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9005051_9012057_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9005051 - 9012057
Intron Length:
7007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
ATTTTTGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTAAGAAAT
Flanking Amino Acid:
PSRDIVGSGTETAGEVAVKN
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.9
0.65
1
74.2
40
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
47.9
-0
2
76.56
39

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032267
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273
ENSAPLT00000041151
8989112 - 9338279
349168