Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_901123_901208_F

Intron Information:

Intron Rank:

129344

Intron Class:

major

Intron Phase:

Intron Coordinates:

901123 - 901208

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCACCCTCACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

77.4

0.62

0.7

72.5

25.7

Minor 5ss

32.6

-2

3.1

44.2

Minor BPS

46.9

-0.2

1.9

53.78

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019585

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020258

899000 - 902223

3224

ENSAPLT00000034030

900726 - 902223

1498

ENSAPLT00000026701

899000 - 902223

3224

ENSAPLT00000024836

899000 - 902223

3224

ENSAPLT00000047929

899000 - 902223

3224

ENSAPLT00000024296

899000 - 902223

3224

ENSAPLT00000035931

899000 - 902223

3224