Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_901233_901480_F

Intron Information:

Intron Rank:

129345

Intron Class:

major

Intron Phase:

Intron Coordinates:

901233 - 901480

Intron Length:

248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

CCGGCTGTCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.4

29.1

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

80.9

0.69

0.8

73.4

36.5

Minor 5ss

28.5

-2.5

35.5

41.2

Minor BPS

-0.6

2.4

54.01

48.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019585

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035931

899000 - 902223

3224

ENSAPLT00000020258

899000 - 902223

3224