Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9143259_9178424_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9143259 - 9178424

Intron Length:

35166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGAAACA

5'SS Class:

major

3'SS Sequence:

TTTTGCCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TTTTGCCTAACA

Flanking Amino Acid:

GVSTVIDATSGKGQKKQNEK

Intron Amino Acid Position:

777

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.1

67.7

37.5

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

78.9

0.65

0.9

74.1

35.4

Minor 5ss

31.7

-2.1

3.2

40.9

45.1

Minor BPS

65.9

0.5

2.1

84.22

35.9

Associated Gene:

Gene:

BCAS3

Ensembl Gene ID:

ENSAPLG00000008363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025827

9143161 - 9338279

195119