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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9179955_9183527_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9179955 - 9183527
Intron Length:
3573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CATATTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTCCCATATTC
Flanking Amino Acid:
GQEDEEWLSQVEIVTHTGPH
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.1
37.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
72.2
0.5
0.9
65.2
35.8
Minor 5ss
59.1
0.31
2.3
74.3
42
Minor BPS
56.1
0.17
1.9
73.03
37.8

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273
ENSAPLT00000025827
9143161 - 9338279
195119
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000035920
8989112 - 9338279
349168
ENSAPLT00000032267
8989112 - 9338279
349168