Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_919326_932413_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

919326 - 932413

Intron Length:

13088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGCTA

5'SS Class:

major

3'SS Sequence:

GAGAGAACGTGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTGTCTTTAAAC

Flanking Amino Acid:

NVMSHMKKAKLEEGHVGTSL

Intron Amino Acid Position:

202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.7

0.39

1.2

60.7

45.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

38.7

-0.6

1.6

29.9

41.1

Minor 5ss

38.8

-1.3

3.6

56.2

Minor BPS

68.4

0.56

1.4

71.11

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012307

912046 - 998764

86719