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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9201733_9208042_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9201733 - 9208042
Intron Length:
6310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATAATT
Flanking Amino Acid:
GAGCFSIKAPCKTKPAPQIS
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
70.9
0.73
1.5
87.01
32

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000035920
8989112 - 9338279
349168
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000043518
8990007 - 9338279
348273