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Intron Name: Anas_platyrhynchos_platyrhynchos_20_9208088_9215414_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9208088 - 9215414

Intron Length:

7327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CCTTTACGTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCATCTAATT

Flanking Amino Acid:

MTLGTITKRTGPYLFGAGCF

Intron Amino Acid Position:

514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

72.4

39.5

Major BPS

100

1.24

0.5

100

Major PPT

63.5

0.31

1.1

64.1

Minor 5ss

31.6

-2.1

3.1

31.8

42.6

Minor BPS

55.5

0.25

1.8

79.26

36.6

Associated Gene:

Gene:

BCAS3

Ensembl Gene ID:

ENSAPLG00000008363

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041151

8989112 - 9338279

349168

ENSAPLT00000035920

8989112 - 9338279

349168

ENSAPLT00000029188

8989112 - 9338279

349168

ENSAPLT00000008738

9098655 - 9338279

239625

ENSAPLT00000043518

8990007 - 9338279

348273