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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9239411_9260547_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9239411 - 9260547
Intron Length:
21137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTACCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCC
Flanking Amino Acid:
PICCMAFNPSGMLLVTTDTL
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.5
0.82
0.8
81.3
35.4
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
71
0.64
1.5
81.25
33.5

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273
ENSAPLT00000025827
9143161 - 9338279
195119
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000035920
8989112 - 9338279
349168
ENSAPLT00000032267
8989112 - 9338279
349168