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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9277420_9289429_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9277420 - 9289429
Intron Length:
12010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TAAAACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTTAATG
Flanking Amino Acid:
CTFTKKFFVTSCYPCPGPNM
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.4
0.48
1
66.5
44.2
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
78.2
0.75
1.2
76.1
35.6

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032267
8989112 - 9338279
349168
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273
ENSAPLT00000025827
9143161 - 9338279
195119
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000035920
8989112 - 9338279
349168