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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9314527_9323459_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9314527 - 9323459
Intron Length:
8933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTATCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TTTGCTTTATCT
Flanking Amino Acid:
AARILPAPQISTQKCDNFSE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
83.1
0.74
0.7
81.9
29.8
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
69.7
0.7
1.7
87.39
38.7

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032267
8989112 - 9338279
349168
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273
ENSAPLT00000025827
9143161 - 9338279
195119
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000035920
8989112 - 9338279
349168