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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_9335556_9337553_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9335556 - 9337553
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTCAACT
Flanking Amino Acid:
VTFLQDVVPQAYSGTPPAEE
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.1
0.63
0.9
70
40.6
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
66.7
0.6
1.5
84.53
36

Associated Gene:

Gene:
BCAS3
Ensembl Gene ID:
ENSAPLG00000008363
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025827
9143161 - 9338279
195119
ENSAPLT00000041151
8989112 - 9338279
349168
ENSAPLT00000008738
9098655 - 9338279
239625
ENSAPLT00000035920
8989112 - 9338279
349168
ENSAPLT00000032267
8989112 - 9338279
349168
ENSAPLT00000029188
8989112 - 9338279
349168
ENSAPLT00000043518
8990007 - 9338279
348273